HsaALTA1011766-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000102699 | PARP4
Description
poly(ADP-ribose) polymerase family member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr13:24478093-24484748:-
Coord C1 exon
chr13:24484653-24484748
Coord A exon
NA
Coord C2 exon
chr13:24478093-24478270
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CCTTTCGCATGTAGTACAAGTAT
3' ss Score
-5.96
Exon sequences
Seq C1 exon
AGGGTTGCTTTTACCCAAAGTAGTGGAAGATCGTGGTGTGCAAAGAACAGACGTCGGAAACCTTGGAAGTGGGATTTATTTCAGTGATTCGCTCAG
Seq A exon
NA
Seq C2 exon
TATCAAGTACTCACACCCGGGAGAGACAGATGGCACCAGACTCCTGCTCATTTGTGACGTAGCCCTCGGAAAGTGTATGGACTTACATGAGAAGGACTTTTCCTTAACTGAAGCACCACCAGGCTACGACAGTGTGCATGGAGTTTCGCAAACAGCCTCTGTCACCACAGACTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699-27-36,27-35-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0064415=PARP=FE(16.9=100)
A:
NA
C2:
PF0064415=PARP=FE(32.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGATCGTGGTGTGCAA
R:
CTCTCCCGGGTGTGAGTACTT
Band lengths:
99-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains