HsaALTA1012848-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000104833 | TUBB4A
Description
tubulin beta 4A class IVa [Source:HGNC Symbol;Acc:HGNC:20774]
Coordinates
chr19:6496995-6501397:-
Coord C1 exon
chr19:6501287-6501397
Coord A exon
NA
Coord C2 exon
chr19:6496995-6497762
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTTTTGTATTTTCAGTAGAGACA
3' ss Score
-6.77
Exon sequences
Seq C1 exon
GAGGAAATTATGTCCCCAGAGCGGTGCTGGTGGACCTGGAACCCGGCACCATGGACTCTGTCCGTTCTGGCCCCTTCGGTCAGATCTTTCGGCCGGACAACTTCGTGTTTG
Seq A exon
NA
Seq C2 exon
ACAGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTAACCTCGCAATCTGCCCGCCTCGGCCTCCCTAAGTGCTGGATTACAGGCATGAGCCACTGCGCCTGGCCAATATTCTAATACTGATTCTTTTCCTCCGGGAGCTTGCATTCCACAGTGAGCTTGCAGACAATAAACATGATTAACAAGAAAACACAGGCCAAGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGGCCATGGCAGGTGGATTGCTCCAGCTCAGGAGTTCAAGAACAGCCTGGGCAACATGTCGAAACCCCACCTCTACAAAAAAAAGATACAAAAATTAGCCAGATCTGGTAGCATAAGCCTGTAGTCCCAGCTACTCAAAAGGCTGGGGCAGGAGGATCACTTGAACCTGGGAAGTCAAGGCTGCAGTGAGCCATGATTGCACCTCTGTACTCCAGCCTGGGCAACATACCAAGACCCTGCCTGAAAATGATATTATTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104833-6-15,6-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=PU(27.0=95.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGTCAGATCTTTCGGCC
R:
GGCAGATTGCGAGGTTAGGAG
Band lengths:
95-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains