HsaALTA1013171-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr19:3855402-3869028:-
Coord C1 exon
chr19:3868965-3869028
Coord A exon
chr19:3855560-3855696
Coord C2 exon
chr19:3855402-3855559
Length
137 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCCTCCTCCTCACCCACCAGGCC
3' ss Score
9.75
Exon sequences
Seq C1 exon
AAGACGCCAAGATGGCGACGAGTCAGTATTTCGACTTCGCGCAGGGCGGCGGCCCGCAGTACAG
Seq A exon
GCCCGCCATGACCAGCCCGTGAGAAAGTGCAACCCCCTGCTCACACCCCCTTGCCGCGTCCTTCCCGGCGGCATGAGAACCATCAGATCGCGTTGAATTATTTTGCTGACCCCGTGTCTCCCTGGACTATCGCGCAG
Seq C2 exon
CACCCTCCTGGAGGACGGGACTTTGGTCTGGTTATTCCCCGCTGCTGTGACAGCGCCCATGACAGCAGCTGGTCCCCACTAGCACCCAGGAAGTATTTATCCAATGACTCAATGAATCTGCCGCCGGATCGCCCGGGACTGCTTTCACTTTCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-0-9,0-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=NA C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGGCGACGAGTCAGTA
R:
AGAAAGTGAAAGCAGTCCCGG
Band lengths:
210-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains