HsaALTA1013172-4/6 @ hg38
Alternative 3'ss
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr19:3831660-3833778:-
Coord C1 exon
chr19:3833664-3833778
Coord A exon
chr19:3831811-3831878
Coord C2 exon
chr19:3831660-3831810
Length
68 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCCTGTCCCTGTCCCCTAGGGA
3' ss Score
10.16
Exon sequences
Seq C1 exon
GACAGTTACAGCTACGGACAGTCAGCAGCTGCCAGGAGCTATGAGGACAGGCCGTACTTCCAGTCTGCTGCCCTCCAGTCTGGGCGCATGACAGCCGCAGACTCCGGCCAGCCAG
Seq A exon
GGACCCAAGAAGCCTGCGGGCAGCCCAGCCCCCATGGCAGTCACAGCCACGCTCAGCCCCCACAGCAG
Seq C2 exon
GCGCCCATAGTGGAGTCCGGACAGCCAGCGAGCACCTTGTCCTCGGGATACACCTACCCCACGGCGACAGGCGTCCAGCCCGAGTCGTCAGCTTCCATCGTGACCTCCTACCCCCCGCCCTCCTACAACCCCACCTGCACCGCCTACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-15-25,15-24,15-23,15-22,15-21,15-20-4/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.872 A=NA C2=0.878
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTATGAGGACAGGCCGTA
R:
CACGATGGAAGCTGACGACTC
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains