HsaALTA1013174-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr19:3816674-3819235:-
Coord C1 exon
chr19:3819045-3819235
Coord A exon
chr19:3816843-3816845
Coord C2 exon
chr19:3816674-3816842
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCATT
5' ss Score
4.45
3' ss Seq
CTGTGGCTTTGTCCCCACAGCAG
3' ss Score
9.72
Exon sequences
Seq C1 exon
CCCGGGCGGCGGCCGGCGTCCAGCGACGACCGGCACGTCATGTGCAAGCACGCCACCATCTACCCCACGGAGCAGGAGCTCCTGGCCGTGCAGAGGGCCGTGTCCCACGCAGAGCGGGCCCTCAAGCTGGTGTCCGACACACTGGCCGAGGAGGACCGGGGCCGCCGAGAGGAAGAGGGTGACAAGCGCAG
Seq A exon
CAG
Seq C2 exon
CGTTGCCCCCCAGACTCGGGTCCTGAAAGGCGTCATGCGAGTAGGCATCCTGGCGAAAGGCCTCCTCCTGCGTGGGGACAGGAACGTGCGCCTCGCTCTGCTCTGCTCCGAGAAGCCCACGCACAGCCTGCTGCGGAGGATCGCCCAGCAGCTGCCCCGGCAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-28-37,28-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF075289=DZF=PU(17.4=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAGCTGGTGTCCGACA
R:
CTTTCAGGACCCGAGTCTGGG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains