HsaALTA1013373-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000105497 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr19:51581787-51586698:+
Coord C1 exon
chr19:51581787-51581882
Coord A exon
chr19:51586627-51586630
Coord C2 exon
chr19:51586631-51586698
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTTCTCTTTCTCCTTTTAGAAA
3' ss Score
12.17
Exon sequences
Seq C1 exon
GGTATCACATTCCCAACCCAGAGGTCATCTTCAGAATGCTAAAAGAAAAGGAGCCGCGTGTGGAGGAGGCTGAAGTCTCACATCAGAGGTGTCAAG
Seq A exon
AAAG
Seq C2 exon
GGAGTTTGGGCTTGAAATCCCACAAAAGGAGATTTCTAAGAAAGCTTCATTTCAAAAGGATATGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105497-8-12,8-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=NA C2=0.123
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAAAGAAAAGGAGCCGCG
R:
ATCTCCTTTTGTGGGATTTCAAGC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains