HsaALTA1013664-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000105866 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr7:21428677-21430843:+
Coord C1 exon
chr7:21428677-21428792
Coord A exon
chr7:21429289-21429332
Coord C2 exon
chr7:21429333-21430843
Length
44 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TACCGTCCCATTTTGGGTAGGAC
3' ss Score
5.65
Exon sequences
Seq C1 exon
ATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCAGCGGCAGCGGCGATGGCTACAGAAGGAGGGAAAACCTCTGAGCCAGAGAATAACAATAAAAAACCCAAAACCTCAGGCTCCCAG
Seq A exon
GACTCTCAGCCCTCTCCTCTGGCTTTACTGGCAGCTACTTGCAG
Seq C2 exon
CAAAATAGGGACTCCTGGTGAAAATCAAGCAACTGGACAACAACAAATTATTATAGATCCAAGTCAAGGATTGGTGCAACTTCAAAATCAACCACAACAGCTAGAACTGGTAACAACGCAACTTGCTGGAAACGCTTGGCAACTTGTTGCCTCCACTCCTCCTGCTTCAAAAGAGAATAACGTTTCTCAACCAGCCTCTAGTTCGTCTAGTTCTTCCAGCAGTAATAACGGGAGTGCATCTCCTACAAAAACTAAATCAGGTAATTCTTCCACCCCTGGTCAATTTCAAGTCATACAAGTACAAAATCCAAGTGGTAGTGTACAGTACCAAGTAATTCCACAACTTCAGACAGTGGAAGGTCAACAAATTCAAATCAATCCAACTAGTAGTTCATCTCTACAGGATTTGCAGGGTCAAATTCAGCTCATTTCTGCAGGTAATAATCAAGCTATACTCACAGCTGCTAACAGGACAGCTTCTGGGAATATTCTTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105866-2-5,2-4,2-3,2-2-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.997 A=NA C2=0.497
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
ENST00000448246fB31307
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCAAAACCTCAGGCTCC
R:
ACCAGTTCTAGCTGTTGTGGT
Band lengths:
135-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains