HsaALTA1013856-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000106261 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:HGNC:13101]
Coordinates
chr7:100029861-100030375:+
Coord C1 exon
chr7:100029861-100029952
Coord A exon
NA
Coord C2 exon
chr7:100030249-100030375
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTGTCTCGTGTTATTTTAGGCA
3' ss Score
9.05
Exon sequences
Seq C1 exon
CTCTTCCTGCTGCCCACATTCCTGCACCCCCTCATGAGGGTAGTCCCAGAGACCAGGCGATGGCATCTGCACTATTCACAGCGGATTCCCAG
Seq A exon
NA
Seq C2 exon
GCAATGGTGAAGATCGAGGACATGGCTGTGTCCCTCATTCTGGAGGAATGGGGATGTCAGAATCTGGCTCGGAGGAATCTCAGTAGGGACAACAGGCAGGAGAATTATGGGAGCGCATTTCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106261-15-21,15-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=NA C2=0.616
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCTGCTGCCCACATTC
R:
AAATGCGCTCCCATAATTCTCCT
Band lengths:
212-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains