HsaALTA1015527-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000109971 | HSPA8
Description
heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
Coordinates
chr11:123060165-123061329:-
Coord C1 exon
chr11:123061120-123061329
Coord A exon
NA
Coord C2 exon
chr11:123060165-123060211
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTAATGACTCTCAGCGTCAGGCT
3' ss Score
-2.1
Exon sequences
Seq C1 exon
CAACCATGTCCAAGGGACCTGCAGTTGGTATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTTTTCCAGCACGGAAAAGTCGAGATAATTGCCAATGATCAGGGAAACCGAACCACTCCAAGCTATGTCGCCTTTACGGACACTGAACGGTTGATCGGTGATGCCGCAAAGAATCAAGTTGCAATGAACCCCACCAACACAGTTTTTG
Seq A exon
NA
Seq C2 exon
GCTACCAAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109971-10-25,10-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=PU(10.4=91.3)
A:
NA
C2:
PF0001215=HSP70=FE(5.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAACCGAACCACTCCAAG
R:
AGACCAGCAATAGTTCCAGCA
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains