HsaALTA1016081-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr12:113114800-113115264:-
Coord C1 exon
chr12:113115200-113115264
Coord A exon
chr12:113114847-113114912
Coord C2 exon
chr12:113114800-113114846
Length
66 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTGGTGCCCCCTGCCCCCAGCTC
3' ss Score
8.91
Exon sequences
Seq C1 exon
TGGACCCCAACACCCTCTTCCGTTCTAACTCCCTGGCATCCAAGTCGATGGAACAGTTTATGAAG
Seq A exon
CTCGTGGGCATGCCCTACCTGCACGAGGTCCTGAAGCCTGTGATTAGCCGTGTCTTTGAGGAGAAG
Seq C2 exon
AAGTACATGGAGCTGGATCCCTGCAAGATGGACCTGGGCCGCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344-21-24,21-23,21-22,21-21-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCCAACACCCTCTTC
R:
GCCCAGGTCCATCTTGCAG
Band lengths:
104-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains