HsaALTA1017031-1/5 @ hg38
Alternative 3'ss
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4 member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr5:140363439-140363902:+
Coord C1 exon
chr5:140363439-140363555
Coord A exon
NA
Coord C2 exon
chr5:140363810-140363902
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGGACGCCCTGCATCTCCAGTGC
3' ss Score
5.84
Exon sequences
Seq C1 exon
GCTTCCCTCGCAACAGCGGGAGATCAGAGGTCCCGCCGTCCCGCGCCTGACCTCGGCTGAGGACAGGCACCGCCATGGGCCACACGCACACAGCCCGGAGTTGCAGCGGACCGGCAG
Seq A exon
NA
Seq C2 exon
TGCTTCTCGGCCGTACTCTACATTTACCTGGCCACTGTCACTAATGCCATCACTTTTGGGGGTCTGCTGGGAGATGCCACTGATGGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-10-13,10-12,10-11,10-10,10-9-1/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.0=12.5)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCGGGAGATCAGAGGTC
R:
GTGACAGTGGCCAGGTAAATGT
Band lengths:
147-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains