HsaALTA1017035-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4 member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr5:140372745-140374927:+
Coord C1 exon
chr5:140372745-140372843
Coord A exon
chr5:140374777-140374826
Coord C2 exon
chr5:140374827-140374927
Length
50 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTCTTCTATTAGTTCACAGGTG
3' ss Score
5.17
Exon sequences
Seq C1 exon
TCAGAGCTGATGTATCAGCCAAAGGCTCCAGAAATCAACATTTCTGTGAATTAGCTGGAGTAGGAGTCTGGGAGTGGAGACCCCAGGAAACAGCATGAG
Seq A exon
GTGCTTACTCAGGAAGTCAGGACATTTTTGGCCTTTGGCTTAACTTCCAG
Seq C2 exon
ATGCTCAGTCGGCTTGGGGAAGGACTGAAGGGCAGCTGCCAAGACCTCAGTTACCTCCTGACCTGAGGGTGGAGAGTGGCAGGAAGCAAGCATGTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-27-35,27-34,27-33-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGTAGGAGTCTGGGAG
R:
CAAACATGCTTGCTTCCTGCC
Band lengths:
144-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains