HsaALTA1017795-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000114841 | DNAH1
Description
dynein axonemal heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr3:52366733-52368918:+
Coord C1 exon
chr3:52366733-52366887
Coord A exon
chr3:52368741-52368745
Coord C2 exon
chr3:52368746-52368918
Length
5 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TCTCCTCCCTGGCGCTGCAGGAC
3' ss Score
8.89
Exon sequences
Seq C1 exon
TGTTACAGAGTCCTGGCAGCTGCCATGACGTCACTGAAAGGGCAGCCATCCATCAGTGGTGGCATGTACGAGGCTGTCAACTACTACGTGCTCAACCCCAAGTCCATCACGATGGGCCAGCTGTACGGGGAGTTTGACCTCCTCACCCATGAGTG
Seq A exon
GACAG
Seq C2 exon
ACGGGATATTCTCCTCGTTCATCCGGGCGGGGGCCATCACCTCCGACACCAACAAGAAGTGGTACATGTTCGATGGGCCGGTGGATGCCATCTGGATTGAGAACATGAACACGGTGCTGGATGACAACAAGAAGCTGTGCCTCAGCTCTGGGGAGATCATCAAGCTCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-56-74,56-73,56-72,56-71-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.7=100)
A:
NA
C2:
PF077289=AAA_5=FE(40.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTACGGGGAGTTTGAC
R:
ACCACTTCTTGTTGGTGTCGG
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains