HsaALTA1018179-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000115414 | FN1
Description
fibronectin 1 [Source:HGNC Symbol;Acc:HGNC:3778]
Coordinates
chr2:215371909-215372300:-
Coord C1 exon
chr2:215372109-215372300
Coord A exon
NA
Coord C2 exon
chr2:215371909-215372015
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CAATCCAAATGCCTCTACAGGAC
3' ss Score
5.77
Exon sequences
Seq C1 exon
TTCAAAAGACCCCTTTCGTCACCCACCCTGGGTATGACACTGGAAATGGTATTCAGCTTCCTGGCACTTCTGGTCAGCAACCCAGTGTTGGGCAACAAATGATCTTTGAGGAACATGGTTTTAGGCGGACCACACCGCCCACAACGGCCACCCCCATAAGGCATAGGCCAAGACCATACCCGCCGAATGTAG
Seq A exon
NA
Seq C2 exon
GACAAGAAGCTCTCTCTCAGACAACCATCTCATGGGCCCCATTCCAGGACACTTCTGAGTACATCATTTCATGTCATCCTGTTGGCACTGATGAAGAACCCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115414-107-122,107-121-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(9.0=10.8)
A:
NA
C2:
PF0004116=fn3=PU(47.8=91.7)
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTTTAGGCGGACCACAC
R:
CAGAAGTGTCCTGGAATGGGG
Band lengths:
135-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains