HsaALTA1018740-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr1:109113679-109114336:+
Coord C1 exon
chr1:109113679-109113915
Coord A exon
chr1:109114128-109114130
Coord C2 exon
chr1:109114131-109114336
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTTTTCCGCCTTCTGCCAGCAG
3' ss Score
7.05
Exon sequences
Seq C1 exon
TTCTTTCTCTCGGTTCACACGCCACGTGTGCAACATCGGAGATGCTCATAAAATAACCCCTGGCCCGAAAGGGCAGTAGAAAACGGAAATTTGTTGGCTGGCTTGGAGGATGCTTCCACTGTGTTCTTCACACGAGCCCCGGGCCTGCCTGTTGGGCCGGTTGCGCACCCCGGGCGCGCGCTCTCCCGCGCCCACGCCGCGCGCACCAGCGGCGGCGGCTGCCATGGCGACCCGCAG
Seq A exon
CAG
Seq C2 exon
AAGCAGCAGCCGCAGCACCTGAGCCGCTACTGCCGCTCACTCAGGACAACGCTATGGCTGAGCCTGGGCACAGCCACCATCTCTCCGCCAGAGTCAGGGGAAGAACTGAGAGGCGCATACCCCGGCTGTGGCGGCTGCTGCTCTGGGCTGGGACCGCCTTCCAGGTGACCCAGGGAACGGGACCGGAGCTTCATGCCTGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299-0-5,0-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.299
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTTCACACGAGCCCC
R:
AGTAGCGGCTCAGGTGCTG
Band lengths:
148-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains