HsaALTA1021004-3/5 @ hg38
Alternative 3'ss
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:HGNC:12996]
Coordinates
chr16:3116427-3119015:+
Coord C1 exon
chr16:3116427-3116547
Coord A exon
chr16:3118905-3118920
Coord C2 exon
chr16:3118921-3119015
Length
16 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CAGCATCTCTTTCTGGGCAGGCT
3' ss Score
6.48
Exon sequences
Seq C1 exon
ATGCCAGTGACTTTCGAGGATGTGGCCTTGTACCTCTCCCGGGAGGAGTGGGGACGGCTGGACCACACGCAGCAGAACTTCTACAGGGATGTCCTGCAGAAGAAAAATGGGCTGTCACTGG
Seq A exon
GCTTTCCCTTCAGCAG
Seq C2 exon
GCCTTTCTGGGCCCCTCAAGCGCACGGCAAGGGTGAGGCCTCGGGCTCCAGCCGGCAGGCAGGAGATGAGAAGGAGTGGAGAGGCGCGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386-12-14,12-13,12-12,12-11,12-10-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.737
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(94.9=90.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAGAAGAAAAATGGGCT
R:
CGCCTCTCCACTCCTTCTCAT
Band lengths:
116-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains