HsaALTA1021449-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000123453 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr9:133733843-133738357:-
Coord C1 exon
chr9:133738254-133738357
Coord A exon
chr9:133734204-133734221
Coord C2 exon
chr9:133733843-133734203
Length
18 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
CCCCTCTGCACCCCACCCAGCTC
3' ss Score
4.7
Exon sequences
Seq C1 exon
GGCCTGGAGTTCCGGCCAGGCCACTGCTTGGGAAGCAAGAAGGTGAAGGCACCTCTGCTGGGCCAAGCACTCTTAGGGCCGAGGGGCACTGCAGCTGACAAGAG
Seq A exon
CTCTGATTCTCTCCCCAG
Seq C2 exon
CTCCCTGTTTCGCTGAGGCCTGGAGCCCCCATGGCCTCACTGAGCCGAGCCCTACGTGTGGCTGCTGCCCACCCTCGCCAGAGCCCTACCCGGGGCATGGGGCCATGCAACCTGTCCAGCGCAGCTGGCCCCACAGCCGAGAAGAGTGTGCCATATCAGCGGACCCTGAAGGAGGGACAGGGCACCTCGGTGGTGGCCCAAGGCCCAAGCCGGCCCCTGCCCAGCACGGCCAACGTGGTGGTCATTGGTGGAGGCAGCTTGGGCTGCCAGACCCTGTACCACCTGGCCAAGCTGGGCATGAGTGGGGCGGTGCTGCTGGAGCGGGAGCGGCTGACCTCCGGGACCACCTGGCACACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123453-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.477
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(15.2=38.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGCCAAGCACTCTTAG
R:
GTAGGGCTCGGCTCAGTGAG
Band lengths:
103-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains