HsaALTA1021846-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:HGNC:13111]
Coordinates
chr19:43919577-43922217:-
Coord C1 exon
chr19:43922171-43922217
Coord A exon
chr19:43919700-43919762
Coord C2 exon
chr19:43919577-43919699
Length
63 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATCTTTTTCACATTTCTCAGTGC
3' ss Score
7.77
Exon sequences
Seq C1 exon
ACTTGGCACTTCTCCAGAAGGAGGAGGACAAAATGACGAAGTCTAAG
Seq A exon
TGCTATCCCTTTTCCAGTGGACCTTTATTGCAAGATTTAGGTGGAGTGTGTTTGATGTTGTAG
Seq C2 exon
GAGGCAGTGACATTCAAGGACGTGGCTGTGGTCTTCTCTGAGGAGGAGCTGCAACTGCTGGACCTTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAATGTGGTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459-17-20,17-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAGGACAAAATGACGA
R:
TCTCCAGCATCACATCTCGGT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains