HsaALTA1021995-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr6:7181124-7181923:+
Coord C1 exon
chr6:7181124-7181246
Coord A exon
NA
Coord C2 exon
chr6:7181878-7181923
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATC
5' ss Score
7.05
3' ss Seq
TCCAATTTTCAGTTTTATAGCAG
3' ss Score
0.92
Exon sequences
Seq C1 exon
TGTCAACGAGTACTACCAAGAGAAGAAGACAAGAGGTCAACACAGACTCATTTTCTACTCCGTGTGAATGATAGCTACAGCAGGGGAAAGTTTCATAGTCTATCAGTGGGTCAGAAAATGGAG
Seq A exon
NA
Seq C2 exon
CAGAGGCTTCTTAGAAGCTTAAACCCCTGTCCCAATGACGTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782-27-14,27-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF047109=Pellino=PU(8.9=15.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGATAGCTACAGCAGGGGA
R:
TGGGACAGGGGTTTAAGCTTC
Band lengths:
93-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains