HsaALTA1022508-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000125945 | ZNF436
Description
zinc finger protein 436 [Source:HGNC Symbol;Acc:HGNC:20814]
Coordinates
chr1:23367042-23368065:-
Coord C1 exon
chr1:23367973-23368065
Coord A exon
chr1:23367169-23367212
Coord C2 exon
chr1:23367042-23367168
Length
44 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ATCATGTTTCTAATTTCAAGAAG
3' ss Score
3.67
Exon sequences
Seq C1 exon
CGCTGTCTGCTAGCTGCTTTTCCTGCTCTCTCTCCCTGGAGGCGAACCCTTGTGCTCGAGATGGCAGCCACCCTGCTCATGGCTGGGTCCCAG
Seq A exon
AAGTCCTAAATACAGAATAGTAGGGAAGTATCGTGTGATTTCAG
Seq C2 exon
GCACCTGTGACGTTTGAAGATATGGCCATGTATCTCACCCGGGAAGAATGGAGACCTCTGGACGCTGCACAGAGGGACCTTTACCGGGATGTTATGCAGGAGAATTATGGAAATGTTGTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125945-1-5,1-4,1-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCCTTGTGCTCGAGATGG
R:
ATCCCGGTAAAGGTCCCTCTG
Band lengths:
140-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains