HsaALTA1023275-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000128524 | ATP6V1F
Description
ATPase H+ transporting V1 subunit F [Source:HGNC Symbol;Acc:HGNC:16832]
Coordinates
chr7:128862826-128865203:+
Coord C1 exon
chr7:128862826-128863062
Coord A exon
chr7:128865091-128865119
Coord C2 exon
chr7:128865120-128865203
Length
29 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGG
5' ss Score
9.77
3' ss Seq
CTGCATATTGAATACACCAGTGT
3' ss Score
0.3
Exon sequences
Seq C1 exon
GCCGACGGGGCGCCGTACGGCGGAGGCGGGGTTTCAGTGGCTTCTGGTGCTCTAGGGTGAGCTCTGCCCGGCTGCAGGGATGGCGGGGAGGGGTAAGCTCATCGCAGTGATCGGAGACGAGGACACGGTGACTGGTTTCCTGCTGGGCGGCATAGGGGAGCTTAACAAGAACCGCCATCCCAATTTCCTGGTGGTGGAGAAGGATACAACCATCAATGAGATCGAAGACACTTTCCG
Seq A exon
TGTGCACCCTAATCAATCTTCATTACCAG
Seq C2 exon
TTCACTTGGAAGCCTTCCGGGCAGTGTTGTAGAAGCCAACCCTAATCAGCGTGACCCTCCGCTTTGGGATGAAATTGATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128524-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.655
Domain overlap (PFAM):
C1:
PF0199012=ATP-synt_F=PU(44.1=84.9)
A:
NA
C2:
PF0199012=ATP-synt_F=PD(13.2=24.1),PF0199012=ATP-synt_F=PU(8.1=17.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCGCCATCCCAATTTCCT
R:
GGTCACGCTGATTAGGGTTGG
Band lengths:
125-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains