HsaALTA1024259-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin gamma complex associated protein 2 [Source:HGNC Symbol;Acc:HGNC:18599]
Coordinates
chr10:133295524-133298111:-
Coord C1 exon
chr10:133297952-133298111
Coord A exon
chr10:133295865-133295911
Coord C2 exon
chr10:133295524-133295864
Length
47 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
CCCTTGTGCCACCTGTGCAGACT
3' ss Score
7.66
Exon sequences
Seq C1 exon
TCTCTGGAACTTAAAAGAAAGATGCTTCGAGACAAGCAGAACAAAAAAAATTCAGGCCAGCACCTCCCCATCTTCCCAGCATGGGTGTATGAGAGACCTGCCCTGATCGGGGATTTCCTGATTGGTGCTGGCATCAGCACAGACACCGCTTTGCCGATAG
Seq A exon
ACTTGAGAATGGAGCTCACTGTGGTGTTCATGCCGGGGCCTGTCTAG
Seq C2 exon
CTCCTCACCCCACGATTTGACCAGTGCCACACCACGGGACCTTGTGTGACCTCGGGCCTGCGTCCTCTGGAAAACAGCTGTGGAGTGGTGTGATGAGGACAGGTGCCTTGGAAAGCATCAGGACCTTGTGAGCACGAGGCAGCTGCCAGCACTCCACGTTCCCGCCATGCTCTCCTCACCGTGTGGGCATCCACCTGGCCAGCGCCGCCTCCGCAGTGCCCCTCCCTCTGGTCGCTCCCGCGCAGCATGCGAAGGTGTTATCTGCCCGCGTCCTGCCTTTTCCCCACACCGGCACGGAGGAGCCACGTGTTCGGTGGTCGTTCGGACGTGGTGATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640-20-27,20-26,20-25-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGATTGGTGCTGGCATC
R:
CACACCACTCCACAGCTGTTT
Band lengths:
138-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains