HsaALTA1024277-4/5 @ hg38
Alternative 3'ss
Gene
ENSG00000130653 | PNPLA7
Description
patatin like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr9:137500691-137501727:-
Coord C1 exon
chr9:137501650-137501727
Coord A exon
chr9:137500889-137501057
Coord C2 exon
chr9:137500691-137500888
Length
169 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTGAAATCATGAAACCGTAGACG
3' ss Score
1.34
Exon sequences
Seq C1 exon
GACTCATCTCTGTTGGATGGCCGGGTGGCGCTTCTGCACGTTCCTGCAGGCACGGTGGTGTCAAGGCAGGGAGACCAG
Seq A exon
ACGCTGCCGAAATGTTTCCAGTGAAGTCCATGCCCAGAGCTGATCAGGTCGGCGGATGGTCTCCCGGCTGAGCCTGGTGGCATCGTCCGCTCTGGGCCCAGAGCTGCCCCCGTCCTGCCCGCGGCCACTCGCGGCGCCTCCTGAGCCCTCTCGTGTGTCAGGACGCCAG
Seq C2 exon
CATCCTGTTCGTGGTCTCGGGGCTGCTGCACGTGTACCAGCGGAAGATCGGCAGCCAGGAGGACACCTGCTTGTTCCTCACGCGCCCCGGGGAGATGGTGGGCCAGCTGGCCGTGCTCACCGGGGAGCCTCTCATCTTCACCGTCAAGGCCAACAGGGACTGCAGCTTCCTGTCCATCTCCAAGGCCCACTTCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130653-27-37,27-36,27-35,27-34,27-33-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(16.3=57.7)
A:
NA
C2:
PF0002724=cNMP_binding=FE(73.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCTCTGTTGGATGGCCG
R:
GATGGACAGGAAGCTGCAGTC
Band lengths:
254-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains