HsaALTA1024719-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000131115 | ZNF227
Description
zinc finger protein 227 [Source:HGNC Symbol;Acc:HGNC:13020]
Coordinates
chr19:44212528-44213237:+
Coord C1 exon
chr19:44212528-44212585
Coord A exon
chr19:44213087-44213089
Coord C2 exon
chr19:44213090-44213237
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGATCTTTTTTTTTTTTAAGAAG
3' ss Score
5.07
Exon sequences
Seq C1 exon
AGGCAGAGCCACTTCCGCCCCGGAAAGCGAGGCCGCCACCATCTTTTGGGTCCGGGAG
Seq A exon
AAG
Seq C2 exon
GATTGAGTCATCGGGCTCCAATGCGTGGGGATGTTTACCGCCGTTTATCCGGGATAGAGACTCCATCGTGCTGACAGCATCCTTTTATTCACCGCCTCCGAATTTGCAAAGAGGAGGAAGGAGGGACTTCTTGGCTTCTCCCAGCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131115-1-9,1-8,1-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTTTGGGTCCGGGAG
R:
TGTCAGCACGATGGAGTCTCT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains