HsaALTA1025682-4/5 @ hg38
Alternative 3'ss
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149903648-149907378:-
Coord C1 exon
chr5:149907312-149907378
Coord A exon
chr5:149903696-149903861
Coord C2 exon
chr5:149903648-149903695
Length
166 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AAGGTGACTTTTCTGTCTAGTAG
3' ss Score
3.04
Exon sequences
Seq C1 exon
GAATCCACCTCCTGACCATTGGGCTTTAGTAAGCGGTCTCCCAGCTTATGTTGCCCAGAATGGCCTG
Seq A exon
TAGCCTCAGTGAATAATTGAAAACTGTCTCGACTATGTCTACCTGATGAAAAGAATGTGAATGCCTTGGACAAGAACATGGTGTTTCTGAAAATGGTATACAGTGCTTCACTGGGCACCCTCTCAGGCCTAATCACACCTTCATTATTCCCCTTCACTGCTCTCAG
Seq C2 exon
ATTTGCAACATCATGAATGCGCCTGCGGAGGACTTTTTTGCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915-22-21,22-20,22-19,22-18,22-17-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
NA
C2:
PF0159021=GAF=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACCTCCTGACCATTGGG
R:
CAGGCGCATTCATGATGTTGC
Band lengths:
90-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains