HsaALTA1027410-3/5 @ hg38
Alternative 3'ss
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180022698-180024582:+
Coord C1 exon
chr1:180022698-180022848
Coord A exon
chr1:180024431-180024497
Coord C2 exon
chr1:180024498-180024582
Length
67 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
3' ss Seq
TTTGACAGTAGCACTTTAAGCCC
3' ss Score
-6.96
Exon sequences
Seq C1 exon
GGTTTGAAGACAAGTTGGACAGAGGAACATCAACATCACGGCCTTTGAATGCCACCGCAACTCCTCTAAGTGGTGTTTCATATGAAGATGATTTTGTCTCCTCTCCAGGGACTGGGACTTCGACAGAAAAAAAATCAACTCTTGAACCTCA
Seq A exon
CCCTCAGGAGGACCATTCTAACAGAAAGTCTGCCTATGATCCTTCCTCTGTGGATGTTACCTCCCAG
Seq C2 exon
CATTCATCAGGAGCCCAGTCTGCTGCATCGTCTCGTTCATCTACTTCTTCTAAAGGAAAGAAAGGAAAAAAGGAAAAGACAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-29-42,29-41,29-40,29-39,29-38-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCAACATCACGGCCT
R:
GATGAACGAGACGATGCAGCA
Band lengths:
169-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains