HsaALTA1027577-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103684989-103688215:+
Coord C1 exon
chr12:103684989-103685084
Coord A exon
chr12:103688190-103688192
Coord C2 exon
chr12:103688193-103688215
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
ATTGTCATTTCTCTCCGAAGCAG
3' ss Score
6.04
Exon sequences
Seq C1 exon
GCAAGCTGTCAATCTACTTCGTCTGGTGTCTGGAGCTGTGTTTGTCAAGAGGGCTATGAAGGAGATGGCTTTCTGTGCTATGGAAACGCAGCAGTG
Seq A exon
CAG
Seq C2 exon
CTATATTTAACCGATGGATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-30-41,30-40,30-39-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(67.6=78.1)
A:
NA
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains