HsaALTA1028149-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000136856 | SLC2A8
Description
solute carrier family 2 member 8 [Source:HGNC Symbol;Acc:HGNC:13812]
Coordinates
chr9:127402557-127403747:+
Coord C1 exon
chr9:127402557-127402753
Coord A exon
chr9:127403655-127403737
Coord C2 exon
chr9:127403738-127403747
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGATGGCCAGTATCCGTCAGAGC
3' ss Score
-3.5
Exon sequences
Seq C1 exon
GCTGGGTGCTGGAGTGGCGCTGGCTGGCTGTGCTGGGCTGCGTGCCCCCCTCCCTCATGCTGCTTCTCATGTGCTTCATGCCCGAGACCCCGCGCTTCCTGCTGACTCAGCACAGGCGCCAGGAGGCCATGGCCGCCCTGCGGTTCCTGTGGGGCTCCGAGCAGGGCTGGGAAGACCCCCCCATCGGGGCTGAGCAG
Seq A exon
AGCAGAGCTTTCACCTGGCCCTGCTGCGGCAGCCCGGCATCTACAAGCCCTTCATCATCGGCGTCTCCCTGATGGCCTTCCAG
Seq C2 exon
CAGCTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136856-9-16,9-15,9-14,9-13-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PD(59.2=87.9),PF100274=DUF2269=PD(59.0=69.7),PF0008319=Sugar_tr=PU(3.5=7.6)
A:
NA
C2:
PF0008319=Sugar_tr=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains