HsaALTA1028215-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000136918 | WDR38
Description
WD repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:23745]
Coordinates
chr9:124854205-124855958:+
Coord C1 exon
chr9:124854205-124854325
Coord A exon
chr9:124855797-124855860
Coord C2 exon
chr9:124855861-124855958
Length
64 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
AGGCCAGCGTTCCCTTTCAGATG
3' ss Score
5.64
Exon sequences
Seq C1 exon
GTCAACTCTTCTGCCTTCTCCCCTGATGGCCAGATGCTGCTCACAGGCTCAGAAGATGGCTGCGTGTATGGCTGGGAGACCCGGAGTGGGCAGCTGCTGTGGAGGCTGGGTGGCCACACAG
Seq A exon
ATGGTGCTGTGTCCTGTGTCACGTCACCTTTCCACCTTCCCCGACCCCGGGCTGGTGCCTGCAG
Seq C2 exon
GTCACCAACGGAGTGTGGAGACGGTCAGCTTCAGCCCTGACTCGAGACAGCTGGCATCAGGTGGCTGGGACAAGCGGGTGATGCTCTGGGATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136918-2-6,2-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(65.8=61.0),PF0040027=WD40=PU(28.2=26.8)
A:
NA
C2:
PF146551=RAB3GAP2_N=FE(48.5=100),PF0040027=WD40=PD(76.9=90.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACAGGCTCAGAAGATGGC
R:
CTGTCTCGAGTCAGGGCTGAA
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains