HsaALTA1029213-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000138131 | LOXL4
Description
lysyl oxidase like 4 [Source:HGNC Symbol;Acc:HGNC:17171]
Coordinates
chr10:98257981-98259228:-
Coord C1 exon
chr10:98259009-98259228
Coord A exon
chr10:98258070-98258167
Coord C2 exon
chr10:98257981-98258069
Length
98 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTGAAGCAGGTTTCTCCCAGCAG
3' ss Score
-4.04
Exon sequences
Seq C1 exon
GCTGAAGAGCCTGACGAATAAGAACTCCTTCTGGATCCACCAGGTCACCTGCCTGGGGACAGAGCCCCACATGGCCAACTGCCAGGTGCAGGTGGCTCCAGCCCGGGGCAAGCTGCGGCCAGCCTGCCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCTCACTTCCGCCCACCGAAGACAAAGCCACAACGCAAAGGGTCCTGGGCAGAG
Seq A exon
CAGGAGCCGAGGGTGCGCCTGCGCTCCGGGGCCCAGGTGGGCGAGGGCCGGGTGGAAGTGCTCATGAACCGCCAGTGGGGCACGGTCTGTGACCACAG
Seq C2 exon
GTGGAACCTCATCTCTGCCAGTGTCGTGTGTCGTCAGCTGGGCTTTGGCTCTGCTCGGGAGGCCCTCTTTGGGGCCCGGCTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138131-10-11,10-10,10-9-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(44.9=71.6)
A:
NA
C2:
PF0053013=SRCR=PU(56.1=88.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACATGGCCAACTGC
R:
ACTGGCAGAGATGAGGTTCCA
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains