HsaALTA1030338-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000140265 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:HGNC:26673]
Coordinates
chr15:43369998-43371025:-
Coord C1 exon
chr15:43370558-43371025
Coord A exon
NA
Coord C2 exon
chr15:43369998-43370025
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
GCCATCTTTCTCTGCCCTAGGAA
3' ss Score
11.07
Exon sequences
Seq C1 exon
GTACTTGGGAGGCTGGAGAGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGTCAGGGTCGGACCCCGAGTGGGTGAGGCTGGCCCGGAGGCAAGGATGCGAGGGGGTTGAGGGGCAGCTCGAGAGGGAGACGCTCCCAGGGGTGGGCTGGAGGGCGCCCTCAGGGCGCCTTAGCCGGGTCAGAGGCCTCTGGAGGGACCGCACGACGGCTCCGGGTTACCCGGCCGGAGGGAGCGGAGACAAAAGAGGCCAGAATCCCGCAGCCGCTGCTCCTTGGGCTGAGAGCTCTGCGTCCGCGAACCGGCAGCACCTGGAGCCTCTGGCCGACACCCGAGCCCGTCCTCAGGAAGCCCGTTACTACTGCTCCTCGGATTCCGTCTCTCCTGCCCAATGTGACTCTCCCCAAGCCCCCATGGTCCTCGCTTTGGAGCCAAAACCAGCTTCTCTCCTTGCGCGAGGTTTTCCGACAG
Seq A exon
NA
Seq C2 exon
GAAGAAACACCTCTTACAGTCATCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140265-0-4,0-1,0-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAGGGCGCCTTAGC
R:
TGCAGATGACTGTAAGAGGTGT
Band lengths:
341-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains