HsaALTA1030339-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000140265 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:HGNC:26673]
Coordinates
chr15:43364126-43366808:-
Coord C1 exon
chr15:43366110-43366808
Coord A exon
chr15:43364383-43364487
Coord C2 exon
chr15:43364126-43364382
Length
105 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
ATTTTTACTTTTTCATCTAGGAG
3' ss Score
9.16
Exon sequences
Seq C1 exon
GAAGGTGGCAGGTGTGCACTGGGGCTATGAAGAGACCAGAACGCTCCTCGCAATTCTCAGCCAGACTGAGTTTTATGAGGCTCTCAGAAACTGCCATAGGAACAGCCAAGTGTATGGGGCTGTGGCTGAGCGGCTCAGGGAATATGGCTTCCTCCGGACCCTGGAACAGTGTCGGACCAAGTTCAAAGGTCTCCAGAAGAGCTATCGGAAAGTCAAGAGCGGCCACCCACCTGAGACCTGCCCCTTCTTTGAAGAGATGGAAGCCCTGATGAGTGCTCAGGTCATTGCCCTGCCCAGTAATGGCCTGGAAGCAGCAGCCTCTCACTCTGGCCTGGTAGGCAGCGATGCTGAGACTGAAGAGCCAGGGCAGAGGGGCTGGCAGCATGAGGAGGGAGCAGAAGAGGCTGTGGCTCAGGAGTCTGACAGTGATGACATGGATCTAGAGGCGACCCCCCAGGACCCCAACTCAGCTGCACCTGTTGTGTTCAGAAGCCCAGGTG
Seq A exon
GAGCCTGAGCTTAGGTGAATTCTCATGATGCAGATGATAGGACTGAGGAATTCAGGCTCTAAAGCTCTGGATTAAGTGGTGCTGAAATTTCTCTTCTGGTGGCAG
Seq C2 exon
GTGTACACTGGGGCTATGAAGAGACCAAGACTTACCTTGCAATTCTTAGTGAGACCCAGTTTTATGAAGCCCTCCGGAACTGTCACCGCAACAGCCAGCTGTATGGAGCAGTGGCTGAGAGGTTATGGGAATATGGCTTTCTTAGGACCCCAGAACAGTGTCGGACCAAGTTTAAAAGCCTGCAAACCAGCTATCGGAAAGTTAAGAATGGCCAGGCACCAGAGACCTGTCCCTTCTTTGAAGAGATGGATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140265-9-14,9-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=36.8),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=100.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAGGAGTCTGACAGTGA
R:
CGACACTGTTCTGGGGTCCTA
Band lengths:
255-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains