HsaALTA1030844-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000140995 | DEF8
Description
differentially expressed in FDCP 8 homolog [Source:HGNC Symbol;Acc:HGNC:25969]
Coordinates
chr16:89947925-89949513:+
Coord C1 exon
chr16:89947925-89948814
Coord A exon
chr16:89949417-89949419
Coord C2 exon
chr16:89949420-89949513
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGGGTGGCTTCTCCCTGCAGCAG
3' ss Score
7.73
Exon sequences
Seq C1 exon
GTGCAGTGGTGCGATCTCGGCTCACTCCGAGCTCCGCCTCCCGGGTTCACGCCGTTCTCCCGCCTCAGCCTCCCGCGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGCTAATTTTTCGTATTTTTAGTGGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGCGATCCGCCCGCCTCGGCCTCCCGAAGCGCTGGGATGACAGGCGTGAGCCGCCGCGCCCGCCCATTTTTTTTAAACGTGTTGGGGTTTGGGTTTCAGCCACAGGCCTTCTGCGATGAGAGGAAACCCAGGACGCGCAGCCCCAGGTCAGGCCCGCGGAACAGCCGGGCGGACTCCGGGGCTCGCAGACTCGCGACCCGCGTGCCATGAACCTCCGCGCCGGAGGCGGCAGCAGCGAGCGCGGGGCTGGATCCAGCGTAGCGGGGCGGCCGGGCGGATCCAGCGCAGCCGGGAGACAGATGCGAGGCGGCGGTCAG
Seq A exon
CAG
Seq C2 exon
GTGCCGAACCCACGGCCAGGCTTCCGTGGCCAGCAGCCCTAGAGGAATGGCCATCCTGTCCCTGCGAGCCCCTGGGCCCTGGCAGGCGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140995-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.382
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCGGGAGACAGATG
R:
ACAGGATGGCCATTCCTCTAGG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains