HsaALTA1030929-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000141086 | CTRL
Description
chymotrypsin like [Source:HGNC Symbol;Acc:HGNC:2524]
Coordinates
chr16:67930737-67930999:-
Coord C1 exon
chr16:67930920-67930999
Coord A exon
NA
Coord C2 exon
chr16:67930737-67930743
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAAACGCAGAGCCCTTGCAGGTT
3' ss Score
-4.91
Exon sequences
Seq C1 exon
GACAGCAGCGGCTTCCACTTCTGCGGTGGTTCTCTCATCAGCCAGTCCTGGGTGGTCACTGCTGCCCACTGCAATGTCAG
Seq A exon
NA
Seq C2 exon
GTTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141086-5-5,5-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(12.8=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains