HsaALTA1031459-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000142065 | ZFP14
Description
ZFP14 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:29312]
Coordinates
chr19:36360435-36362238:-
Coord C1 exon
chr19:36362112-36362238
Coord A exon
NA
Coord C2 exon
chr19:36360435-36360533
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
CACATTTTTCTTTTAAGCAGGAC
3' ss Score
6.68
Exon sequences
Seq C1 exon
GGTTCAGTGACATTCAGGGATGTGGCCATAGACTTCTCACAGGAAGAATGGGAATTCCTGGATCCTGCTCAGAGGGACTTATATAGGGATGTAATGTGGGAGAACTACAGCAACTTCATTTCACTAG
Seq A exon
NA
Seq C2 exon
GACCTTCCATTTCTAAACCAGATGTGATTACCTTATTGGATGAAGAAAGGAAGGAACCTGGGATGGTTGTGAGGGAAGGGACAAGAAGATACTGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142065-5-4,5-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.173
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGAGAACTACAGCAACT
R:
ACCATCCCAGGTTCCTTCCTT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains