HsaALTA1032087-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000143322 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr1:179109208-179110455:-
Coord C1 exon
chr1:179110282-179110455
Coord A exon
chr1:179109432-179109441
Coord C2 exon
chr1:179109208-179109431
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GATCGGCCATTTCTCATCAGGGT
3' ss Score
6.91
Exon sequences
Seq C1 exon
AGGTAGCTGAGGAGCTTGGGAGAGCCGCCTCCTCGTCATCTGTTGTTCCATACCTGCCCCGGCTACCTATACTTCCTTCCAAGACTCGGACACTGAAGAAACAGGTGGAGAACAAGGAGAACATTGAAGGGGCACAAGATGCCACAGAAAATTCTGCTTCCAGTTTAGCACCAG
Seq A exon
GGTTCATCAG
Seq C2 exon
AGGTGCACAGGCCTCTAGTGGATCCCCAGCACTGCCTCGAAAGCAAAGAGACAAGTCACCCAGCAGCCTCTTGGAAGATGCCAAAGAGACATGCTTCACCAGGGATAGGAAGGGGGGCTTCTTCAGCTCCTTCATGAAGAAGAGAAATGCTCCTACACCCCCCAAACGCAGCAGCTCCTTCCGAGAAATGGAGAATCAGCCCCATAAGAAATACGAACTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143322-31-36,31-35-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.752
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF089195=F_actin_bind=WD(100=18.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACATTGAAGGGGCACA
R:
CAGTGCTGGGGATCCACTAGA
Band lengths:
93-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains