HsaALTA1033195-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2 [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr4:113311255-113317809:+
Coord C1 exon
chr4:113311255-113311399
Coord A exon
NA
Coord C2 exon
chr4:113317722-113317809
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
ACCAGCCTTCGATCCTTCAGTTC
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTGATGACACAATGACTGGTGATGGGGGAGAATACCTTAGGCCTGAGGACCTAAAAGAACTGGGTGATGACTCACTACCCAGCAGTCAGTTCCTGGATGGTATGAATTACCTGCGATACAGCTTGGAGGGAGGACGATCTGACAG
Seq A exon
NA
Seq C2 exon
TTCCGACAGGTCTCACACTCTGAGCCATGCCTCCTACCTGAGGGACAGTGCCGTGATGGATGACTCAGTTGTGATTCCCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362-57-72,57-71-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=NA C2=0.195
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTCAGTTCCTGGATGGT
R:
GTAGGAGGCATGGCTCAGAGT
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains