HsaALTA1033544-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000146094 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr5:177504091-177504915:-
Coord C1 exon
chr5:177504743-177504915
Coord A exon
chr5:177504572-177504660
Coord C2 exon
chr5:177504091-177504571
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCCGTGTGCCCTGTGCCCAGGGC
3' ss Score
8.85
Exon sequences
Seq C1 exon
TGGGCGAGTTTCCCGTGGTGGTGCAGAGGACTGAGGCCGCCACCCGCTGCCAGCTGAAGGGGCCGGCCCTGCTGGTGCTGGGCCCAGACGCCATCCAGCTGAGGGAGGCCAAGGGCACCCAGGCCCTCTACAGCTGGCCCTACCACTTCCTGCGCAAGTTCGGCTCCGACAAG
Seq A exon
GGCGTGTTCTCCTTTGAGGCCGGCCGTCGCTGCCACTCGGGTGAGGGCCTCTTTGCCTTCAGCACCCCCTGTGCCCCTGACCTGTGCAG
Seq C2 exon
GGCTGTGGCCGGGGCCATCGCCCGCCAGCGGGAGCGGCTGCCAGAGCTGACCAGGCCCCAGCCCTGCCCCCTGCCACGGGCCACCTCTCTGCCCTCCCTGGACACCCCCGGAGAGCTTCGGGAGATGCCACCAGGACCTGAGCCACCCACGTCCAGGAAAATGCACCTGGCCGAGCCCGGACCCCAGAGCCTGCCGCTACTGCTAGGCCCGGAGCCCAACGATCTGGCGTCCGGGCTCTACGCTTCAGTGTGCAAGCGTGCCAGTGGGCCCCCAGGCAATGAGCACCTCTATGAGAACCTGTGTGTGCTGGAGGCCAGCCCCACGCTGCACGGTGGGGAACCTGAGCCGCACGAGGGCCCCGGCAGCCGCAGCCCCACAACCAGTCCCATCTACCACAACGGCCAGGACTTGAGCTGGCCCGGCCCGGCCAACGACAGTACCCTGGAGGCCCAGTACCGGCGGCTGCTGGAGCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146094-21-26,21-25,21-24,21-23-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.778
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(90.5=100)
A:
NA
C2:
PF0217412=IRS=PD(1.6=2.1)
Main Skipping Isoform:
ENST00000312943fB14186
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCACTTCCTGCGCAAGTT
R:
CTCAGGTCCTGGTGGCATCTC
Band lengths:
176-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains