HsaALTA1033718-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35392212-35392679:+
Coord C1 exon
chr1:35392212-35392352
Coord A exon
chr1:35392647-35392652
Coord C2 exon
chr1:35392653-35392679
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
ATGTTTTAATTTATATCAAGGTG
3' ss Score
5.61
Exon sequences
Seq C1 exon
CAAATATTTCCATGGTTCAAGCTGCTTCAGCAGGACCCCCATCTCTGAGAAAAGATTCGACTCCAGTTATAGCCAATGTAGTATCATTGGCAAGTGCCCCTGCTGCTCAGCCTACAGTGAATTCTAACAGTGTCTTACAAG
Seq A exon
GTGCAG
Seq C2 exon
TTCCAACAGTAACAGCGAAAATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-65-54,65-53-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTCCAGTTATAGCCAATGT
R:
TGATTTTCGCTGTTACTGTTGGA
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains