HsaALTA1034160-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000147789 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr8:144829478-144837507:+
Coord C1 exon
chr8:144829478-144829604
Coord A exon
chr8:144837391-144837393
Coord C2 exon
chr8:144837394-144837507
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTTCTCTGCCGCACACACAGCAG
3' ss Score
3.31
Exon sequences
Seq C1 exon
GAGGTGGTAACATTTGGCGATGTGGCTGTGCACTTCTCTCGGGAGGAGTGGCAGTGTCTGGACCCTGGCCAGAGGGCCCTCTACAGGGAAGTGATGCTGGAGAACCACAGCAGTGTGGCTGGACTAG
Seq A exon
CAG
Seq C2 exon
GATTCCTGGTTTTCAAGCCTGAGCTGATCTCTCGGCTGGAGCAGGGAGAAGAGCCATGGGTCCTCGACCTGCAGGGAGCAGAGGGGACAGAGGCACCAAGGACCTCCAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147789-8-16,8-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.455
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGAAGTGATGCTGGAGA
R:
GACCCATGGCTCTTCTCCCT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains