HsaALTA1034267-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000148204 | CRB2
Description
crumbs 2, cell polarity complex component [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr9:123356170-123363188:+
Coord C1 exon
chr9:123356170-123356354
Coord A exon
chr9:123363026-123363032
Coord C2 exon
chr9:123363033-123363188
Length
7 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCGCTCTGTGTGTGCCCCAGGGT
3' ss Score
8.69
Exon sequences
Seq C1 exon
AGTGCTGGTTGGAGGGACGAGGGGGGTGCGGAGCCAGCCAGGCCGCCCTCCCGTTCTCACAGCAGCCGAGCAGAGCGCAGAGCGGGCTGCCATGGCGCTGGCCAGGCCTGGGACCCCGGACCCCCAGGCCCTGGCCTCTGTCCTGCTACTGCTGCTCTGGGCCCCTGCCCTTTCCCTCCTGGCTG
Seq A exon
GGTCCAG
Seq C2 exon
ATCCCACCGGCTTCCGCTGCTACTGCGTGCCGGGTTTCCAGGGCCCACGCTGCGAGCTGGACATCGATGAGTGTGCATCCCGGCCGTGCCACCATGGGGCCACCTGCCGCAACCTGGCCGATCGCTACGAGTGCCATTGCCCCCTTGGCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148204-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=31.2),PF0000822=EGF=PU(90.3=25.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCTTTCCCTCCTGG
R:
CACTCATCGATGTCCAGCTCG
Band lengths:
95-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains