HsaALTA1035735-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000152061 | RABGAP1L
Description
RAB GTPase activating protein 1 like [Source:HGNC Symbol;Acc:HGNC:24663]
Coordinates
chr1:174875546-174877605:+
Coord C1 exon
chr1:174875546-174875713
Coord A exon
chr1:174876983-174877391
Coord C2 exon
chr1:174877392-174877605
Length
409 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TCATCTGTTTATTTTCTAAGATT
3' ss Score
6.72
Exon sequences
Seq C1 exon
GGAAGCTCTGAGTCACTGAATAGCAAAGAAAAATATGAAAGCAAGAGGAATTGCTTTCACATCTAGAAAATGTTGCAAGATAATCTGAAATCTTCTGGTGCTGGTGAATGCATGAAGAGGTTCACAGTATCTTTTAAAGTACTTCTGAAAAGATAAGGAGTTTAAAAG
Seq A exon
ATTACGAAAAAATAAGCGTTAAGAACACTAAGAAAATTTACTTCTTCTCCAAGAACAATCTTCATGTAATAATACTGCAGTAAGAAGATGAGCTATTATGAAAATTTTTAATTACCAAGAACATAACACAAATCAGTTTTTTTTGTTGTTGTTATTGCTATAGGATATTTCTAGTTAGGAAACTTTATTTCTTTTTTGAAGTTTAAAGGTTTCCAAAAATTGAATTTTCCAGCTTCTCTGTTATAAATGCAGAAGGTGTTTATAGTGTATACTTCCTGCATAGATAAGAAACCTCTTTTAGTTTCCTACTGGGGGTGAATTGCTAGCCAAGCCTGTGATAGCAGCCGCTTTTTTTTTCTTTCTCTTTCTTTCTTTCTGGATTTTTGACACTCCACCCCCTCGAACTCAG
Seq C2 exon
GTGGGTGTGTACACTGGCACTGAGCTGCAGTAGGATTTTTCCTTGGATAGTCTGGTCTGGAGCTGGGACAGCAGCTGCTGCTGTGGAAAGGCCAGCTGGCAAGATGATGGAAGAAATCTCCATTATGGTAGCCTATGACGCCCATGTTTTCAGCCAGCTGCACGATGAAGACTTCCTCACTAGTCTGGTGGCCATCAGCAAGCCCAGGTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152061-117-93,117-92-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTCTGAGTCACTGAATAGC
R:
AAGTCTTCATCGTGCAGCTGG
Band lengths:
342-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains