HsaALTA1037230-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000155975 | VPS37A
Description
VPS37A, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr8:17298067-17302314:+
Coord C1 exon
chr8:17298067-17298158
Coord A exon
chr8:17302163-17302213
Coord C2 exon
chr8:17302214-17302314
Length
51 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
GTATGTCTTACTTCTTCCAGGGC
3' ss Score
8.49
Exon sequences
Seq C1 exon
ACATACACTGTCAAACGGAAGAAATTAAAGCCACATCCTCAATATTAGGCAACAGAGTTTCTAAGAGTGGACAGCTCCAAGAAGGTTGTGAA
Seq A exon
GGCCTCTAGTTCTTCCTCTAGCTGCTGAGTTTCTTCCTTCACTGCCATTAG
Seq C2 exon
GTAATCTGTAACTGACTGTCGGGGCTGCATCCCCTTTTCAAAGCGGTTATACATTCCACTCCAAAACCTGGAAAGGATGGCAAAGCGTCGTGATACCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155975-47-43,47-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAAGAGTGGACAGCTCCA
R:
AGGTGGTATCACGACGCTTTG
Band lengths:
135-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains