HsaALTA1038726-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000160111 | CPAMD8
Description
C3 and PZP like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr19:16896229-16896665:-
Coord C1 exon
chr19:16896456-16896665
Coord A exon
chr19:16896253-16896326
Coord C2 exon
chr19:16896229-16896252
Length
74 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CGAGGCCCCCTTCCTTCCAGAGC
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCTGGTTCCCCGGCGAGTCGGGCCCTGCCGTGGCCCCTGAGGAGGGGGCGGCGATCGCGCGATGCGGCTGCGACCACGACTGCGGCGCCCAGGGGAACCCGGTGTGCGGCTCCGACGGGGTGGTCTACGCCAGCGCCTGCCGCCTGCGGGAGGCCGCCTGCCGCCAGGCCGCGCCCCTGGAGCCCGCGCCTCCCAGCTGCTGCGCCCTCG
Seq A exon
AGCAGCGGCTGCCGGCCTCGTCGTCCTCCACCTACGGGGATGACCTGGCTTCTGTGGCCCCGGGGCCTTTACAG
Seq C2 exon
CAGGACGTGAAGCTGAATGGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160111-77-72,77-71,77-70-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.820
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=57.7)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGACGGGGTGGTCTAC
R:
GCTCCATTCAGCTTCACGTCC
Band lengths:
124-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains