HsaALTA1038935-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000160345 | C9orf116
Description
chromosome 9 open reading frame 116 [Source:HGNC Symbol;Acc:HGNC:28435]
Coordinates
chr9:135498585-135499872:-
Coord C1 exon
chr9:135499709-135499872
Coord A exon
NA
Coord C2 exon
chr9:135498585-135498663
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GAGTGTTTCTCATCTACCAGGAC
3' ss Score
7.11
Exon sequences
Seq C1 exon
CCCGCTTCTCCTCCAGGCACAATGGCTGAGGAATGCCCCAGAGCGTGCGCGGAGCCTGTGGCGCCCAAGGCCACGGCCCCGCCGGAGAGGACCAGCGACTACTACCGCGTGAGCGCGGACCTGCCGGGCAGGTTCAACAACCCGGGGTGGTTCCGGGGCTACAG
Seq A exon
NA
Seq C2 exon
GACCCAGAAGGCTGTCTCCGTGTACAGGACCAGTAACCAGGCTTACGGGAGCAGAGCCCCCACCGTGCACGAGATGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160345-2-6,2-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.445 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF148921=DUF4490=PU(61.0=97.9)
A:
NA
C2:
PF148921=DUF4490=FE(33.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGACCAGCGACTACTACC
R:
TGGTCCTGTACACGGAGACAG
Band lengths:
111-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains