HsaALTA1039448-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr12:49990268-49990792:-
Coord C1 exon
chr12:49990684-49990792
Coord A exon
chr12:49990344-49990377
Coord C2 exon
chr12:49990268-49990343
Length
34 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGC
5' ss Score
7.53
3' ss Seq
TATTCAACCATTTTTTATAGAAT
3' ss Score
5.53
Exon sequences
Seq C1 exon
TGAGTTTACTGGGACCTGTGACCACTCCTGAACATCAGCTTCTCAAGACTCCTTCATCTAGTTCCCTGTCACAGAGAGTCCGTTCCACCCTCACCAAGAACACTCCTAG
Seq A exon
AATATTTTTCCAGTTCATTCTCTTTTTATTGTAG
Seq C2 exon
ATTTGGGAGCAAAAGCAAGTCTGCCACTAACCTAGGACGACAAGGCAACTTTTTTGCTTCTCCAATGCTCAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800-57-64,57-63,57-62-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.865 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTGACCACTCCTGAACA
R:
GCAGACTTGCTTTTGCTCCCA
Band lengths:
120-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains