HsaALTA1039537-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000162065 | TBC1D24
Description
TBC1 domain family member 24 [Source:HGNC Symbol;Acc:HGNC:29203]
Coordinates
chr16:2475051-2496309:+
Coord C1 exon
chr16:2475051-2475170
Coord A exon
NA
Coord C2 exon
chr16:2496118-2496309
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTGTCCTCCCCTTCCGGCAGTCC
3' ss Score
9.63
Exon sequences
Seq C1 exon
CCGGAGCCCCGCGGGCTCTCCGGGGTGGGCACAGGGCGACAGCTCGGCGGGGGCGGGGCCGAGCACGCGCGTGCGCAGAAAGGCCGGCGCGGCAGGCTGAGGAGAAAGCGGCGCGCGGAG
Seq A exon
NA
Seq C2 exon
TCCAGGGCCTCCTCCCGAGCACAGCGGCGCTATGGACTCTCCAGGATACAACTGCTTCGTGGACAAAGACAAGATGGACGCTGCCATCCAGGACCTGGGGCCCAAGGAGCTGAGCTGCACTGAACTGCAGGAACTGAAGCAGCTGGCGCGCCAGGGCTACTGGGCCCAAAGCCACGCCCTGCGGGGAAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162065-0-6,0-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0056613=RabGAP-TBC=WD(100=64.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGCTGAGGAGAAAGC
R:
TCAGTTCCTGCAGTTCAGTGC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains