HsaALTA1040809-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000163795 | ZNF513
Description
zinc finger protein 513 [Source:HGNC Symbol;Acc:HGNC:26498]
Coordinates
chr2:27378467-27378993:-
Coord C1 exon
chr2:27378884-27378993
Coord A exon
chr2:27378616-27378618
Coord C2 exon
chr2:27378467-27378615
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CACTGCCCCTTTGCCTGCAGCAG
3' ss Score
8.15
Exon sequences
Seq C1 exon
CGGCCGGGCACTAAGTGCGGAGAGTGAAGTTGAGGAGCCAGCCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGCCTGCCAGCTGTGTGGGGGGCCGACAG
Seq A exon
CAG
Seq C2 exon
CCTGGGCAACCTGAGGCGGCATCAGCGTACCCACGCAGGGCCCCCCACTCCTCCCTGCCCGACCTGTGGCTTCCGCTGCTGTACTCCACGACCAGCCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGGCGGTGCCCCGGCGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163795-4-10,4-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGAGGAGCCAGCCAGG
R:
CTGATGCCGCCTCAGGTTG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains