HsaALTA1041923-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000165124 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr9:110503038-110514106:-
Coord C1 exon
chr9:110513948-110514106
Coord A exon
chr9:110511528-110511530
Coord C2 exon
chr9:110503038-110511527
Length
3 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
AGAGGAAAAATATGTATTAGAAG
3' ss Score
-4.02
Exon sequences
Seq C1 exon
CTTGCCCATCGGGGACATACAAACCTGAAGGCTCACCAGGAGGAATCAGCAGTTGCATTCCATGTCCTGATGAAAATCACACCTCTCCACCTGGAAGCACATCCCCTGAAGACTGTGTCTGCAGAGAGGGATACAGGGCATCTGGCCAGACCTGTGAAC
Seq A exon
AAG
Seq C2 exon
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTACTGACACAATGAATGGACCTAGTTAGAAGTCAAATTAATAAATTAGAAAACTAACTCAAGAAATTCATTTGAAGGTCAATCAAAAAAATCCAAAAATAAAAATATGAAAGAATAAAGTAACATGAGAATAGTCACAGGAAATAGACTCTTTTCACGTGAGGAATCCAGAGAGAGAACAGAATGGAGGAGATGCACCAGTAGAAGATCTAAAGATATATCCCTGAGCTGAAATTTTGAAAATACTCACAACCCAAATCTTGGATATTCAGTTTAAAATCACTTAGTAAGTGCCACAAAAAAAATATTAAAAACAGATTTATGTCGGGAAATAATCTTAGTGAATTTTCTGAATGCCCTAGAAAAACAGAAAACTGTGTCCATTTCATAGTTAGAAACAACACTACCTACCAAGGAGAAAGAATCAGATTAGCCTTAGGCCCCTTTGTTGGCCATTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165124-10-17,10-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PD(74.5=70.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGAGGGATACAGGGCAT
R:
GGTCCATTCATTGTGTCAGTACCT
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains