HsaALTA1041934-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000165124 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr9:110445837-110447057:-
Coord C1 exon
chr9:110446900-110447057
Coord A exon
chr9:110446034-110446065
Coord C2 exon
chr9:110445837-110446033
Length
32 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ATGTCTTTCAAGTGCCACAGTCT
3' ss Score
0.3
Exon sequences
Seq C1 exon
ATGCCTGTGTGCAGCTGGCTTCACAGGATCACACTGTGAATTGAACATCAATGAATGTCAGTCTAATCCATGTAGAAATCAGGCCACCTGTGTGGATGAATTAAATTCATACAGTTGTAAATGTCAGCCAGGATTTTCAGGCAAAAGGTGTGAAACAG
Seq A exon
TCTGCACACTTTTCTTATTCATTGCAGAACAG
Seq C2 exon
TCTACAGGCTTTAACCTGGATTTTGAAGTTTCTGGCATCTATGGATATGTCATGCTAGATGGCATGCTCCCATCTCTCCATGCTCTAACCTGTACCTTCTGGATGAAATCCTCTGACGACATGAACTATGGAACACCAATCTCCTATGCAGTTGATAACGGCAGCGACAATACCTTGCTCCTGACTGATTATAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165124-44-68,44-67,44-66-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(35.5=20.4),PF0000822=EGF=WD(100=57.4)
A:
NA
C2:
PF0035412=Pentaxin=PU(29.9=85.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCCAGGATTTTCAGGCA
R:
AGAGATGGGAGCATGCCATCT
Band lengths:
113-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains